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ORIGINAL RESEARCH COMMUNICATION |
1 From the Childhood Nutrition Research Center, Institute of Child Health, London, United Kingdom (AS, JL, KK, and AL); the Dundee University Gut Group, Ninewells Hospital Medical School, Dundee, United Kingdom (GM and SM); the Leicester General Hospital NHS Trust, Leicester, United Kingdom (AE-J); the Faculty of Medicine and Health Sciences, Academic Division of Child Health, University of Nottingham, United Kingdom (TS); the HJ Heinz Company Ltd, Kendal, United Kingdom (PD)
2 Supported by the Medical Research Council with a charitable contribution from the HJ Heinz Company Ltd. The trial formulas were generously suppled by the HJ Heinz Company Ltd, Hayes Middlesex, United Kingdom. 3 Reprints not available. Address correspondence to A Singhal, Childhood Nutrition Research Center, Institute of Child Health, 30 Guilford Street, London, United Kingdom, WC1N 1EH. E-mail: a.singhal{at}ich.ucl.ac.uk.
| ABSTRACT |
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Objective: We tested the hypothesis that nucleotide supplementation of infant formula has beneficial effects on fecal bacteriology.
Design: Oligonucleotide probes were used to measure bacterial genus-specific 16S ribosomal RNA in stools of a subset of infants (mean age: 20.4 wk) who were randomly assigned to nucleotide-supplemented (31 mg/L; n = 35) or control formula (n = 37) from birth until age 20 wk or were breastfed (reference group; n = 44). The microbial pattern was assessed as the ratio of Bacteroides-Porphyromonas-Prevotella group (BPP) to Bifidobacterium species.
Results: The ratio of BPP to Bifidobacterium spp. rRNA in infants randomly assigned to the nucleotide-supplemented formula was lower than in infants receiving the control formula (mean difference: –118%; 95% CI: –203%, –34%; P = 0.007), but it did not differ in infants who were breastfed. The difference between randomized formula-fed groups was independent of potential confounding factors (P = 0.003).
Conclusions: Our data support the hypothesis that nucleotide supplementation improves the composition of the gut microbiota in formula-fed infants. Because this effect could contribute to previously described benefits of nucleotide supplementation for gastrointestinal tract and immune function, these findings have important implications for optimizing the diet of formula-fed infants.
| INTRODUCTION |
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In formula-fed infants, dietary nucleotide supplementation was shown to reduce the incidence of diarrhea (3–6), possibly by a favorable effect on the gastrointestinal microbiota. For instance, in vitro studies suggest that nucleotides enhance the growth of bifidobacteria (13–15), which by reducing stool pH could reduce the growth of pathogenic bacteria and hence the incidence of infectious diarrhea (7, 8, 10, 16). Bifidobacterium spp. are found in higher proportions in the stools of breastfed compared with formula-fed infants (16–19), but whether this effect is related to the higher concentration of nucleotides in breast milk compared with formula is uncertain.
Data to support an effect of dietary nucleotides on the gut microbiota are conflicting (20, 21). One study concluded that the addition of nucleotides to infant formula resulted in a microbial pattern in the stool that was more like that of breastfed infants (20), whereas, in contrast, another investigation suggested that dietary nucleotides discouraged the growth of bifidobacteria (21). However, those previous studies were small and nonrandomized and used bacterial culture rather than more robust molecular techniques to assess fecal microbiology (20, 21). Here, we have investigated the effects of nucleotide supplementation of infant formulas on fecal microbiota, incidence of diarrhea, and stool characteristics with the use of an experimental study design. We used genus-specific 16S ribosomal RNA (rRNA)–targeted, oligonucleotide probes to test the hypothesis that a higher dietary intake of nucleotides has beneficial effects on the fecal microbiota of formula-fed infants. Specifically, we assessed the ratio of Bacteroides-Porphyromonas-Prevotella group (BPP) to Bifidobacterium spp. rRNA because the relative abundance of these bacteria are known to differ between breastfed and formula-fed infants (19, 22), are known to be affected by dietary factors in infancy (16, 18), and are suggested to influence neonatal health (22).
| SUBJECTS AND METHODS |
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Study design
Formula-fed infants were randomly assigned within a few days of birth to a nucleotide-supplemented infant formula (31 mg/L; n = 100) or a control formula with <5 mg/L nucleotides (n = 100). A random permuted block design, stratified by center (Nottingham or Leicester), allocated by an independent statistician, and concealed by sealed opaque envelopes was used. Infants not withdrawn from the study continued to receive the assigned formula until 5 mo of age. All mothers and research staff members were blinded to the identity of the formula.
The nucleotide composition of supplemented formula was based on the concentration and composition of free nucleotides and nucleosides in human milk as reflected in current European regulations (23). The supplemented formula contained cytidine monophosphate (CMP; 15 mg/L), uridine monophosphate (5 mg/L), adenosine monophosphate (6 mg/L), guanosine monophosphate (2 mg/L), and inosine monophosphate (3 mg/L), whereas the control formula (Farley's First Milk) had <3 mg/L of measurable CMP. The study formulas, manufactured by HJ Heinz Company Ltd, Hayes Middlesex, United Kingdom, met European guidelines for the composition of infant formula and were the same except for their nucleotide concentration. Their composition is given in Table 1
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Tolerance to the formulas was monitored throughout the study. Mothers were asked to record crying time per 24-h period, the number of nighttime waking periods, pacifier use, and episodes of colic (according to the mother's interpretation of crying symptoms).
Fecal bacteriology
All mothers still participating in the study at the 20-wk home visit were given collecting pots and asked to collect a fresh sample of their infant's stool by frequently checking the nappy during the day (excluding the first sample in the morning). The sample was collected by the research nurse (or taken by a courier) and frozen at –20 °C within 1 h. The samples were subsequently frozen at –80 °C for later analysis of fecal flora.
Stool samples were assessed for 4 microbial species previously suggested to be influenced by breastfeeding compared with formula feeding (19) and by nucleotide supplementation of infant formula (20). After mechanical disruption of the bacterial cells with the use of a mini bead-beater, total RNA was extracted from stool samples with the use of the phenol-chloroform method described by Dore et al (24). The RNA was then blotted, hybridized, and washed with the use of procedures described by Hopkins et al (25), with minor modifications. The initial nucleic acid concentrations were measured spectrophotometrically at 260 nm (an absorption at 260 nm of 1.0 corresponded to an RNA concentration of 40 g/mL). The RNA was then denatured in a 0.5 (by vol) glutaraldehyde solution, diluted to 1.5 ng/L, and blotted onto Hybond XL nylon hybridization membranes (Amersham Pharmacia Biotech Inc, Bucks, United Kingdom). Oligonucleotide probes were used to quantify the abundance of RNA from bifidobacteria [Bif1412: 5'-CCGGTTTTMAGGGATCC-3' (26)], enterobacteria [Entero 1418: 5'-CTTTTGCARCCCACT-3' (27)], the BPP group [Bacto1080: 5'-GCACTTAAGCCGACACCT-3' (24)], and lactic acid bacteria [Lacto 722: 5'-YCACCGCTACACATGRAGTTCCACT-3' (28)], and the values obtained were expressed as a percentage of the total bacterial rRNA, which was quantified with the use of the probe [Eub338: 5'-GCTGCCTCCCGTAGGAGT-3' (29)]. The sequences were 5' end-labeled with 32P with the use of
-32P ATP and purified with the use of Microspin G-25 columns (Amersham Pharmacia Biotech Inc). The membranes were hybridized with the labeled probes overnight, before the wash procedure at the designated temperature for each probe. RNA abundance was quantified by measuring the 32P signal with the use of an Instant Imager (Canberra Packard, Pangbourne, Berks, United Kingdom) and IMAGEQUANT software (Molecular Dynamics, Sunnyvale, CA). Reference concentrations of RNA representative of the bacterial group were also run on each gel, and standard curves were calculated by linear regression to measure group-specific RNA.
Diarrhea incidence and stool characteristics
Diarrhea or vomiting episodes were recorded as separate illnesses. Diarrhea was defined as a discrete illness lasting >48 h (2, 30) with >3 loose stools in a 24-h period (5) and distinguished from chronic diarrheal disease, such as intolerance to cow milk or malabsorption (30). Mothers also recorded the stool consistency for 3 d before each home visit according to Weaver et al (31).
Statistical analysis
Our a priori outcomes were the effect of nucleotide supplementation on the ratio of BPP to Bifidobacterium spp. rRNA and the incidence of diarrhea. Diarrheal illness was assessed both as the total number of diarrheal episodes and as the proportion of infants with
1 episode of diarrhea from birth to 20 wk of age. Sample size was initially calculated to detect a 0.5 SD difference in the number of diarrheal episodes between randomized formula-fed groups with 80% power at 5% significance. However, successful recruitment meant that the trial was continued beyond that originally planned to give a power of 0.4 SD difference in outcomes between the randomized groups at 80% power and P < 0.05.
Randomized formula-fed groups were compared with the Student's t test for normally distributed variables, the Mann-Whitney U test for not-normally distributed variables, and the chi-square test for dichotomous variables. The ratio of BPP to Bifidobacterium spp. was loge transformed and then multiplied by 100 before statistical analyses (32). Therefore, for 100 loge-transformed data the SD represents the CV, and the difference in means between randomized groups represented the percentage difference between groups (32). Multiple linear regression was used to adjust for confounding factors that could potentially affect stool microbial pattern (sex, age at stool analysis, age at which complementary foods were introduced, socioeconomic status, and mother's education). Values for 16S rRNA from the 4 different groups of bacteria quantified in stool (expressed as a percentage of total bacterial rRNA) could not be transformed to normality; hence, nonparametric statistics were used.
In a secondary analysis, the ratio of BPP to Bifidobacterium spp. in breastfed infants was compared with the 2 formula-fed groups with the use of one-factor analysis of variance and Bonferroni corrections. Statistical analyses were conducted with the use of SPSS for WINDOWS (version 12.0; SPSS Inc, Chicago, IL).
| RESULTS |
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In a secondary analysis that used analysis of variance, the ratio of BPP to Bifidobacterium spp. RNA statistically differed in the 3 dietary groups (P < 0.001) and between the 2 randomized formula-fed groups (P = 0.01). The ratio of BPP to bifidobacteria in breastfed infants was lower than in infants fed control formula (P < 0.001), but it was not significantly different from infants assigned to the nucleotide-supplemented formula (P = 0.5). In the whole study population, the percentage of rRNA from bifidobacteria correlated with both BPP (r = –0.3, P = 0.004) and lactic acid bacteria (r = 0.2, P = 0.04).
Diarrhea incidence, stool frequency, and stool characteristics
The total number of diarrheal episodes or presence of
1 episode up to 20 wk of age did not differ significantly between randomized formula-fed groups (Table 3
). Nucleotide-supplemented infants produced softer stools at 8 wk of age but not at 16 or 20 wk of age, but stool frequency did not differ significantly between randomly assigned formula-fed infants at any age. As expected, breastfed infants had significantly fewer diarrheal episodes during the first 20 wk of age and also between 8 and 20 wk of age (during which comparable, prospective collected data were available in both formula-fed and breastfed infants) (data not presented). Breastfed infants also had a higher stool frequency and softer stools than did formula-fed infants (Table 3
). The ratio of BPP to Bifidobacterium spp. did not significantly correlate with the number of episodes of diarrhea in the whole study population and when the analysis was confined to formula-fed infants.
| DISCUSSION |
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Only 2 previous studies have investigated the effect of dietary nucleotides on stool microbiota in infants. Gil et al (20) found that infants fed nucleotide-supplemented formula (n = 11) had a higher percentage of Bifidobacterium spp. in stools at 4 wk of age than did controls (n = 12). In contrast, a larger and more recent study showed that bifidobacterial counts were reduced in nucleotide-supplemented (n = 32) compared with control formula-fed (n = 33) infants at 2 wk of age (21). Nonrandom dietary assignment, difficulties in accurate quantification of stool bacterial counts with the use of culture techniques, differences in both age at which the fecal microflora was assessed, and the amount of nucleotide supplementation could all potentially explain these discrepant findings. Difficulties in culturing some BPP and bifidobacteria may also be important in the accurate assessment of fecal microflora in infancy (19). However, unlike previous reports, we investigated the effect of nucleotides on stool microbiology with the use of an experimental design and molecular rather than culture techniques. In accordance with earlier in vitro (13–15) and clinical studies (20), we found that nucleotide supplementation of infant formula was associated with a stool microbial composition more like that of a breastfed infant. Indeed, in terms of the equilibrium between BPP and bifidobacteria, the fecal microbial composition of breastfed infants did not significantly differ from infants given nucleotide-supplemented formula, but it was markedly different from infants given control formula.
In contrast to previous reports (3–6), we did not find an effect of nucleotide supplementation on the incidence of diarrhea. One possible explanation for this is that, unlike findings from a developing country (3), a low incidence of diarrhea in a more-developed setting could have reduced our study's power to detect small but clinically important differences between nucleotide-supplemented and control formula-fed infants. Another potential explanation is a low concentration of nucleotides (31 mg /L) in our supplemented formula, which, although in line with European regulations (
33.5 mg/L) (23), was lower than that used in most randomized studies that showed a benefit of nucleotides on diarrheal illness (72 mg /L) (4–6). The latter concentration is an estimate of both free and enzymatically liberated nucleosides in human milk (ie, total potentially available nucleosides) and is higher than the free nucleotide and nucleoside content alone (11, 33). Our study therefore supports the hypothesis that nucleotide supplementation of formula to a higher concentration, more similar to the total available to breastfed infants, is required for a protective effect against diarrhea. Theoretically, differences in the pattern of nucleotide supplementation could also explain differences in study findings, although, to our knowledge, no evidence supports this hypothesis.
We considered a number of study limitations. First, we did not measure live bacterial counts and, like most studies that used 16S rRNA, we could only estimate the proportions of bacterial groups and not specific species or strains. Our study therefore makes the assumption that the group-specific percentage of bacterial rRNA in feces reflects the viable bacterial counts in the colon. In addition, changes in abundance of fecal bacterial population expressed as a proportion of total rRNA could represent shifts in total community composition and ribosomal abundance and not necessarily changes in absolute amounts (25). Nevertheless, 16S rRNA measurements were shown to correlate well with viable bacterial counts (25) and to provide a good measure of the gut microbial composition, which is associated with both neonatal intestinal health (18, 22) and infant feeding (19). Furthermore, the previous observation that nucleotides may affect the relative proportions of bifidobacteria rather than absolute amounts (20) supports our assessment in terms of microbial patterns, rather than absolute bacterial counts.
Second, the effect of nucleotides on bifidobacteria did not reach statistical significance, possibly because the percentage of rRNA from Bifidobacterium spp. in our infants aged
143 d was lower than that seen previously in infants aged < 20 d (19), but more similar to amounts seen in older infants (85–225 d) (24) or adults (<1%) (34). However, this difference was not unexpected in view of the fall in fecal bifidobacterial numbers that occurs with the introduction of solid feeding and with the transition from infant to adult stool microbiota in the first year of life (16–18). Furthermore, the percentage of BPP rRNA in the present study was similar to a previous report (
30%) (24), which supports the validity of our 16S rRNA assay. We assessed fecal microbiology at 5 mo of age to allow the investigation of associations between nucleotide supplementation, diarrheal disease, and fecal microbiology. Nonetheless, the advantage of nucleotide supplementation for fecal microbiology was independent of the age at which complementary foods were introduced, which itself did not differ between nucleotide-supplemented or control formula-fed infants. The fact that differences between randomized formula-fed groups were seen in older infants, after the introduction of complementary foods and therefore large amounts of dietary nucleotides, raises the possibility that the effect of nucleotides on fecal microflora could be even greater in neonates, a hypothesis that requires further testing.
Finally, our study could not address mechanisms. Although >90% of ingested nucleotides are absorbed as nucleosides in the upper intestine (7, 8), some probably pass into the colon, where they could act as cofactors for the growth of bifidobacteria. For instance, the separate addition of adenosine monophosphate, CMP, guanosine monophosphate, uridine monophosphate, and inosine monophosphate was shown to stimulate the in vitro growth of bifidobacteria, whereas the simultaneous addition of these nucleotides had an even greater effect (15). Thus, nucleotide supplementation could have a direct nutritional or prebiotic effect as suggested previously (10) and as supported by findings from in vitro studies (13–15). Dietary nucleotides were also suggested to promote intestinal mucosal and epithelial growth (9), which could provide another nutrient source for colonic bacteria (22). Finally, nucleotides could directly inhibit the growth of specific bacterial groups (eg, BPP), thereby altering the overall microbial pattern, although little evidence supports this hypothesis. A more likely explanation for the lower percentage of BPP in nucleotide-supplemented infants is the inhibition of BPP growth by the bifidobacteria-mediated increase in intestinal acidity (7–9), a hypothesis supported by the negative correlation between the percentage of rRNA from BPP and Bifidobacterium spp. in the present study.
Evidence that the neonatal gut microbiota have long-term effects on immune function (22) and atopic disease (35) raises the possibility that the benefits of nucleotide supplementation of infant formula for immune function could be mediated in part through an effect on the gut microbiota (4, 10). Further research is required to test this hypothesis and the potential long-term benefits for nucleotide supplementation of infant formula.
| ACKNOWLEDGMENTS |
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The author's responsibilities were as follows—AS (principal investigator): was the main author; GM and SM: provided expertise in the assessment of fecal microbiota; JL and KK: supervised data collection. All authors contributed to study design and preparation of the final manuscript for submission. None of the authors had a personal or financial conflict of interest.
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